Bioconductor WGCNA package

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wgcna WGCNA wgcna package

4.8 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

updated 5.9 years ago by Peter Langfelder ★ 3.0k • written 5.9 years ago by bekah ▴ 40

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wgcna wgcna package

5.9 years ago Jack • 0

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wgcna package wgcna

6.0 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by modarzi ▴ 10

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wgcna package software error

updated 6.1 years ago by Peter Langfelder ★ 3.0k • written 6.1 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

6.1 years ago 2323982403 ▴ 60

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wgcna wgcna package

6.2 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 6.2 years ago by Peter Langfelder ★ 3.0k • written 6.2 years ago by bdy8 ▴ 10

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wgcna wgcna package

6.3 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

6.3 years ago bekah ▴ 40

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wgcna package

updated 6.3 years ago by Peter Langfelder ★ 3.0k • written 6.3 years ago by bekah ▴ 40

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RNA-seq WGCNA package soft power

6.3 years ago modarzi ▴ 10

13 results • Page 1 of 1

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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

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A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

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Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20